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rs258723966 SNP Detail
Summary
  • ID
    rs258723966
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr5:87842046 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCATGTAGCA AATGAAACGC
TGCAATCTTT TGACTCCATG TACATATAGT CAAAAGTACA AATAAACAGC AGTATGTGAA
TAATATATGA GCTTAAACAA ATTTTAGATC TCTACAGAAG AAAATTTTGT TACCAAAATC
TAATAAGATT GGCAGATTTA ATTGTGGTTT AGTCGAGCTT AATATCCTGT GTCAGAATTC
M
AAATATACCA ATTAAATCAT TGTTCTTGTA ATTATCTGAC ATCAACATGC AATTCCTTTT
ACCTAGTTAA CCAGTTATAT CAGAACTAAC TGTAACTAGG CAGTAGGCGC TGGGAATTAG
ATTTAAATGA AGATCTGCAG GTGATTTTGT TTTATAGCTA ACCCTATGAA TCATCTATTA
TATAATGAGC TATGTATGTA                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss365777276 MGP_WTSI_5_88123212 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258723966 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss365777276 MGP_WTSI_5_88123212 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:87842046 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Csn2 casein beta within coordinates
D5Mit12 DNA segment, Chr 5, Massachusetts Institute of Technology 12 209 bp distal
D5Mit16 DNA segment, Chr 5, Massachusetts Institute of Technology 16 169 bp distal
D5Mit16.1 DNA segment, Chr 5, Massachusetts Institute of Technology 16.1 12 bp distal
D5Mit16.2 DNA segment, Chr 5, Massachusetts Institute of Technology 16.2 324 bp distal
Tssr1529 transcription start site region 1529 367 bp upstream
Tssr46883 transcription start site region 46883 314 bp upstream
Tssr46884 transcription start site region 46884 327 bp upstream
Tssr46885 transcription start site region 46885 355 bp upstream
Tssr46886 transcription start site region 46886 383 bp upstream
Tssr46887 transcription start site region 46887 400 bp upstream
Tssr46888 transcription start site region 46888 469 bp upstream
Tssr46889 transcription start site region 46889 518 bp upstream
Tssr46890 transcription start site region 46890 533 bp upstream
Tssr46891 transcription start site region 46891 577 bp upstream
Tssr46892 transcription start site region 46892 581 bp upstream
Tssr46893 transcription start site region 46893 609 bp upstream
Tssr46894 transcription start site region 46894 656 bp upstream
Tssr46895 transcription start site region 46895 679 bp upstream
Tssr46896 transcription start site region 46896 774 bp upstream
Tssr51613 transcription start site region 51613 1508 bp upstream
Tssr51614 transcription start site region 51614 1445 bp upstream
Tssr51615 transcription start site region 51615 1389 bp upstream
Tssr51616 transcription start site region 51616 1355 bp upstream
Tssr51617 transcription start site region 51617 1346 bp upstream
Tssr51618 transcription start site region 51618 343 bp downstream
Tssr51619 transcription start site region 51619 381 bp downstream
Tssr51620 transcription start site region 51620 390 bp downstream
Tssr51621 transcription start site region 51621 399 bp downstream
Tssr51622 transcription start site region 51622 437 bp downstream
Tssr51623 transcription start site region 51623 462 bp downstream
Tssr51624 transcription start site region 51624 480 bp downstream
Tssr51625 transcription start site region 51625 486 bp downstream
Tssr51626 transcription start site region 51626 496 bp downstream
Tssr51627 transcription start site region 51627 511 bp downstream
Tssr51628 transcription start site region 51628 552 bp downstream
Tssr51629 transcription start site region 51629 644 bp downstream
Tssr51630 transcription start site region 51630 738 bp downstream
Tssr51631 transcription start site region 51631 787 bp downstream
Tssr51632 transcription start site region 51632 1081 bp downstream
Tssr51633 transcription start site region 51633 1866 bp downstream
Tssr51634 transcription start site region 51634 1988 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory