rs258728064 SNP Detail

Summary

• ID
  rs258728064
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112574566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACATCTTG GCTGAATATT
  TGATAATACA GGACACACAA ACATATTTTT CATAGTTGTT TAATATTTTT ATTTTATAGG
  TAACAGCATC GAGAATACTG CACTGTGTAA GTACTTAGCA CAAAGAACAG GCACATAATT
  CAGAGACAAT CAATAATTAC TGGAGGGCAT ATTAATCTGA TACTTACAAG CTGTGGGTGC
  W
  TGGCAGGGAA ACGCTAACAC GCTCTGTTTT CTGTAGTTAA ATTACTACTT GTCTAGAAAA
  GCAGGAAACT CGTCACGTCC TGTGAAAACA CTTAAGATCA GAACTCTGGA GTCTGAGCAG
  AGGTGCCAAA GTCAGTGTTC ATTGACACCG TGTGGTGTGG CAACAGGCAC AGGGCAGAAT
  ACACACTTTG CATGCTCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390000074	MGP_WTSI_13_113228240	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258728064					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390000074	MGP_WTSI_13_113228240	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112574566 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	within coordinates
Gm59881	predicted gene, 59881	1322 bp upstream
Gm59893	predicted gene, 59893	796 bp downstream
Rr369776	regulatory region 369776	1469 bp upstream
Rr395952	regulatory region 395952	165 bp upstream
Rr403991	regulatory region 403991	1950 bp upstream
Rr486370	regulatory region 486370	within coordinates
Rr486371	regulatory region 486371	1 bp proximal
Rr486372	regulatory region 486372	843 bp proximal
Rr486373	regulatory region 486373	1344 bp proximal
Rr486374	regulatory region 486374	1999 bp proximal
Tssr121117	transcription start site region 121117	116 bp upstream
Tssr121118	transcription start site region 121118	195 bp upstream
Tssr124051	transcription start site region 124051	7 bp downstream
Tssr124052	transcription start site region 124052	1955 bp downstream