rs258729198 SNP Detail

Summary

• ID
  rs258729198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129270629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGTATA TAATTGTGCC
  AAAAATTTGC CTAGTGCATC CCAGCCCTCC CGAGGTGGAG GTAAGATCAA ATTTTCAAGT
  CTAGCCTGAG TCCGCTTTAA AACAAAGAAT AAATAGGTAA ATAAAAGTGC GATTTAAGTG
  ATAAAATCAG CGAAGGTTTT GGTACTTTGG AGACTGTTCC GGGACGCTGC AAGAACAGGG
  Y
  GCCTTGGGGG GCTGCCACGT CTCAGCTCCC TGCCTAGGGA TGAGACTCCC TAACCATTAG
  CGTTTTATTT TTCCCCCTTT CCCCTTTGCT AGGTAGAATA AACAGCCGGA ACCCGTAGCC
  GTCTCATAAG AAATTAAGTG CAATATTTCG TCAAAGTGAA ACCACTCCAT TTACTAAAGT
  TCTGCAAATA GAAAGACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312492	CHEV_4_129054080	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258729198					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129270629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	within coordinates
Rr377176	regulatory region 377176	1009 bp downstream
Rr600215	regulatory region 600215	within coordinates
Rr600216	regulatory region 600216	724 bp proximal
Rr600217	regulatory region 600217	1270 bp proximal
Tssr39144	transcription start site region 39144	1490 bp downstream
Tssr43496	transcription start site region 43496	810 bp upstream
Tssr43497	transcription start site region 43497	990 bp downstream
Tssr43498	transcription start site region 43498	1011 bp downstream
Tssr43499	transcription start site region 43499	1097 bp downstream
Zbtb8a	zinc finger and BTB domain containing 8a	within coordinates