rs258731444 SNP Detail

Summary

• ID
  rs258731444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145855513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACACTTTA CTTGTCCAAA
  ATCCCAGCGT TGGTAGCACG TGCTTGTTGT AATCTTAGTA CTCAGGAGGC TGAGGCCGGA
  GGATTGCTCT GGTTGCCAGT GTGGGCCACA TGGTGAGCTC AAAAGAAATG CAATGAACTT
  TTGAAGGAGT CAGAGGTCTG GGGGCGGGGG TGGGGTGGTG GGGTGGGGAA TGGGGCGGGA
  R
  GGAGGAGGTC AGGACGGCCA GGGGGGCGGG GTGGACGACG GGCGGCCTCA TAGCAGGCTT
  TCCGGACGAC TTCCCTTTAT AAGGGCGTCC ACTCCACCTG CATCTCGCAG ACACCCGTAG
  GCGGAGCCGG GTGTGGGGAC CGTGGGGACT GAGGGAATTT GGGGTCACGT CATGCCCGGA
  GACGAGGAGA CGCTGGACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360110210	MGP_WTSI_3_145812722	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258731444					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360110210	MGP_WTSI_3_145812722	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145855513 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13913	CpG island 13913	4 bp proximal
Mcoln2	mucolipin 2	75 bp upstream
Rr586937	regulatory region 586937	within coordinates
Rr586938	regulatory region 586938	293 bp proximal
Rr586939	regulatory region 586939	427 bp proximal
Rr586940	regulatory region 586940	1677 bp proximal
Tssr32333	transcription start site region 32333	64 bp upstream
Tssr32334	transcription start site region 32334	71 bp upstream
Tssr32335	transcription start site region 32335	100 bp upstream
Tssr32336	transcription start site region 32336	470 bp upstream
Tssr32337	transcription start site region 32337	498 bp upstream
Tssr36030	transcription start site region 36030	69 bp upstream