rs258731911 SNP Detail

Summary

• ID
  rs258731911
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115047690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGCCAGG GCTATACAGA
  GAAACCCTGT CTCGAAAAAC AAAACAAAAC AAAACAAAAC AAAAAAGATT TATTTATTAT
  ATGTAAGTAA ACTATAGATG CCTTCAGACA TACCAGAAGA GGGCGTCAGA TCTTCCTATG
  GCTGGTTGTG AGCCACCATG TGGTTGCTGG GATTTGAACT CAGGACCTTC AGAAGAGCAG
  W
  CAGTGTTCTT AAGCACTGAG CCATCTTACC AGATCAGATA TTTTCTTTAT TTACATTTCA
  AATGTAATTA AACCTTCCCT GGTTTACCCT CTGAAAACCT GCTATCCCAT CCTCCCTCCT
  CTGCTGCTAT GAGGGTGTTC CCTTCACCCA CCCACCCACT CCTGCCTCCC GGCCCCGGCC
  CCGGCATTCC CCTATTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366345341	MGP_WTSI_5_115359638	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258731911					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366345341	MGP_WTSI_5_115359638	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115047690 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	within coordinates
Rr618060	regulatory region 618060	844 bp proximal
Tssr48138	transcription start site region 48138	268 bp upstream
Tssr48139	transcription start site region 48139	1382 bp upstream
Tssr48140	transcription start site region 48140	1416 bp upstream
Tssr48141	transcription start site region 48141	1625 bp upstream
Tssr48142	transcription start site region 48142	1724 bp upstream
Tssr48143	transcription start site region 48143	1753 bp upstream
Tssr48144	transcription start site region 48144	1806 bp upstream
Tssr48145	transcription start site region 48145	1862 bp upstream
Tssr48146	transcription start site region 48146	1911 bp upstream
Tssr48147	transcription start site region 48147	1953 bp upstream
Tssr52739	transcription start site region 52739	1357 bp downstream