rs258735148 SNP Detail

Summary

• ID
  rs258735148
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59438000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAAAATAA GGAAAGGGAC AGGTGGTGGT
  GGGAGAGCCA CTACAGGTCA GGAATTTGTC CTGCAAAAGC CAGGGAGACT GGAAGCTGTA
  GAACCAGCGG CTCGCCCTCC CACATCCTCC ACGCGGCGCA CCGGTCCCCC AAACCCCCAC
  Y
  CGAGTCCAGT CCCCACCCCA CCCCCACCCA CTCCGGGAGA CGCGAGTTGG AGCAGGGCCG
  CCTCCACTAC ACACCCCACA GTCCCCGGGG CGGGCAGTCT GGCGTGCTTC TCGCCGCTCC
  GCCTCCATGA TCCTTCCACG CCCCGACTCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141025	CHEV_4_59450872	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258735148					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59438000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	within coordinates
Rr101075	regulatory region 101075	within coordinates
Susd1	sushi domain containing 1	within coordinates
Tssr37430	transcription start site region 37430	153 bp upstream
Tssr41933	transcription start site region 41933	290 bp downstream
Tssr41934	transcription start site region 41934	345 bp downstream
Tssr41935	transcription start site region 41935	650 bp downstream