rs258735392 SNP Detail

Summary

• ID
  rs258735392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94539298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTACCTTC AATGCGGATT
  TCAGGCCCTA CTTGCCACCG CCCCCTTTCT GCCTTAGATA TCAGTTTCCC CTCCTAATTA
  ACTGGGGGTG GATTTGAGTG ATGGTTGAAA ATTAAAACAA AATGGGATAT TCCTTCCTTT
  CCACATTTCC CCACTTAGGA GCCTCGCCCG TCCTTCCTCC TCTCTGGCTT GCTTCTTGCC
  Y
  CATCCACTCC ACGGTTCCCG GTGAGCCTCC AGGCAGCTCT GCCTGGGGAG GGGTGGCCGG
  CAGGGAACGG GTGCGTGCCT TCCGGGCCTC CTGGCCCTGT TTCCGTTGGC CTGTCAGTTC
  GGGACGGAGG AGTTCGTTAG GACCGTTTAG CGAGGATTCC ATGTCGCTTT GCTGTGACAC
  CTTCGTGCAC ACACAGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375627913	MGP_WTSI_8_96336570	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258735392					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375627913	MGP_WTSI_8_96336570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94539298 () rs orientation: forward

Symbol	Name	Function Class
4930488L21Rik	RIKEN cDNA 4930488L21 gene	within coordinates
Cpgi20831	CpG island 20831	1120 bp distal
Cpgi20832	CpG island 20832	30 bp proximal
Gnao1	guanine nucleotide binding protein, alpha O	within coordinates
Rr667833	regulatory region 667833	1820 bp distal
Rr667834	regulatory region 667834	1347 bp distal
Rr667835	regulatory region 667835	within coordinates
Rr667836	regulatory region 667836	1042 bp proximal
Rr667837	regulatory region 667837	1577 bp proximal
Tssr78794	transcription start site region 78794	1892 bp downstream
Tssr78795	transcription start site region 78795	1869 bp downstream
Tssr78796	transcription start site region 78796	1856 bp downstream
Tssr78797	transcription start site region 78797	1842 bp downstream
Tssr78798	transcription start site region 78798	1827 bp downstream
Tssr78799	transcription start site region 78799	1771 bp downstream
Tssr78800	transcription start site region 78800	1719 bp downstream
Tssr78801	transcription start site region 78801	1663 bp downstream
Tssr78802	transcription start site region 78802	1576 bp downstream
Tssr78803	transcription start site region 78803	1350 bp downstream
Tssr78804	transcription start site region 78804	1322 bp downstream
Tssr82469	transcription start site region 82469	61 bp downstream
Tssr82470	transcription start site region 82470	826 bp downstream
Tssr82471	transcription start site region 82471	907 bp downstream