rs258736261 SNP Detail

Summary

• ID
  rs258736261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137190459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCA TCCTTGGTAG GATAGGAAAG
  Y
  AGATGGAGCC CCACTCTTCC AGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321701923	CHEV_5_137634245	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258736261					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137190459 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	819 bp upstream
Tssr49319	transcription start site region 49319	655 bp downstream
Tssr49320	transcription start site region 49320	643 bp downstream
Tssr53954	transcription start site region 53954	725 bp upstream
Tssr53955	transcription start site region 53955	709 bp upstream
Tssr53956	transcription start site region 53956	690 bp upstream
Tssr53957	transcription start site region 53957	673 bp upstream
Tssr53958	transcription start site region 53958	618 bp upstream
Tssr53959	transcription start site region 53959	605 bp upstream
Tssr53960	transcription start site region 53960	539 bp upstream
Tssr53961	transcription start site region 53961	440 bp upstream
Tssr53962	transcription start site region 53962	422 bp upstream
Tssr53963	transcription start site region 53963	383 bp upstream
Tssr53964	transcription start site region 53964	343 bp upstream
Tssr53965	transcription start site region 53965	318 bp upstream
Tssr53966	transcription start site region 53966	541 bp downstream
Tssr53967	transcription start site region 53967	567 bp downstream