rs258746381 SNP Detail

Summary

• ID
  rs258746381
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65139085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA CATGTGAATA
  TATATGTATT GAAGGTATGT GCATTTACAC GTGTGTGCAT TTGCATGCAT GTGCATGTTT
  ATGTGACTGT GAGTGTAGGT ATGTGCAGAA GACAACTTTG GGTATAGATA TTTGCCTTTC
  CCATTGCTTG AAGAGTCTCT TGTTTATTGC AGCTCACAAA AGGCTATTTG GCTTATGAAC
  K
  TCTTTGGATT CTGCTTCTGT GTCCCATCTG ACTGTGGGCA CACCGGTGGT ACAAATGTGT
  GCTGCTGCTT CTGGCTTTAT GCTTGTTCTG GGAATCAAAG CTCTGCTCCT CAGGTTTGTG
  CAGCAAGTGC TTTATTCAGT GAACGTCTTT CCAGCCCCTA TGGCATCTTT TCTAGACTAC
  TGTCTTGTGA AATAGCAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349899199	MGP_WTSI_1_65146500	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258746381					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349899199	MGP_WTSI_1_65146500	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65139085 () rs orientation: forward

Symbol	Name	Function Class
Cryga	crystallin, gamma A	467 bp downstream
Gm28845	predicted gene 28845	693 bp downstream
Tssr102	transcription start site region 102	722 bp upstream
Tssr7112	transcription start site region 7112	467 bp upstream
Tssr7113	transcription start site region 7113	582 bp upstream
Tssr7114	transcription start site region 7114	592 bp upstream
Tssr7115	transcription start site region 7115	608 bp upstream
Tssr7116	transcription start site region 7116	669 bp upstream
Tssr7117	transcription start site region 7117	697 bp upstream
Tssr7118	transcription start site region 7118	727 bp upstream
Tssr11968	transcription start site region 11968	497 bp downstream
Tssr11969	transcription start site region 11969	527 bp downstream
Tssr11970	transcription start site region 11970	701 bp downstream
Tssr11971	transcription start site region 11971	724 bp downstream
Tssr11972	transcription start site region 11972	746 bp downstream