rs258753238 SNP Detail

Summary

• ID
  rs258753238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137191813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA TATATATATA TATACATACA
  Y
  ACACACACAC AATGCTTTTG GAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss640941710	FVB_NJ_5_137635599	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	C	C	C	C	C	C	C	T	C	T	C	T	C	C	C	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs258753238					SNP	C	C	T	T	C	C	C	C	C	C	C	T	C	T	C	T	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640941710	FVB_NJ_5_137635599	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137191813 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr49320	transcription start site region 49320	1997 bp downstream
Tssr53958	transcription start site region 53958	1972 bp upstream
Tssr53959	transcription start site region 53959	1959 bp upstream
Tssr53960	transcription start site region 53960	1893 bp upstream
Tssr53961	transcription start site region 53961	1794 bp upstream
Tssr53962	transcription start site region 53962	1776 bp upstream
Tssr53963	transcription start site region 53963	1737 bp upstream
Tssr53964	transcription start site region 53964	1697 bp upstream
Tssr53965	transcription start site region 53965	1672 bp upstream
Tssr53966	transcription start site region 53966	803 bp upstream
Tssr53967	transcription start site region 53967	770 bp upstream