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rs258755662 SNP Detail
Summary
  • ID
    rs258755662
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:110682705 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGGCCGCCTG GTCTTCCTGG
    GCCGGCGCTT TGTTCCGGAG TCCCAGCCTC ATGCTTGCAT AGAAGAACCT TTTCCTCGCC
    TCTCCTCCCT GACCCGCCCG GGCCTGGCGT CCTGAGGGCT CGGCGTGGCC TTGCGGCCTG
    GCCTCGGTTT AGCGTCTGGG AGCTTTGCTG AAGAGAGGGA CGTGTGCCCA TCGATAGGAA
    Y
    GCGTTCTGTT TGTTGGTCCT CCATCTGCAG AGTAACGAGA AAAGGATCAA AGGAAGGGCT
    TTGTATCCCA GGCTAGAGGC AGCTTTAACT CAAATGCTCG GCCTGCTGTC ACCGAGCTTG
    ACCCAGACAG TATACTAGGC TGGCTTGAGA AGTGTTTGCA GAGCGCGGGC ATTTGGAAAT
    TGCAAAGTCA TTTTTTAAAG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss372719441 MGP_WTSI_7_118227012 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258755662 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss372719441 MGP_WTSI_7_118227012 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:110682705 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi19582 CpG island 19582 within coordinates
Eif4g2 eukaryotic translation initiation factor 4, gamma 2 468 bp upstream
Gm57201 predicted gene, 57201 within coordinates
Rr381309 regulatory region 381309 within coordinates
Rr653396 regulatory region 653396 923 bp distal
Rr653397 regulatory region 653397 492 bp distal
Rr653398 regulatory region 653398 within coordinates
Rr653399 regulatory region 653399 1118 bp proximal
Rr653400 regulatory region 653400 1709 bp proximal
Tssr68539 transcription start site region 68539 293 bp downstream
Tssr68540 transcription start site region 68540 271 bp downstream
Tssr68541 transcription start site region 68541 154 bp downstream
Tssr74297 transcription start site region 74297 1861 bp upstream
Tssr74298 transcription start site region 74298 1443 bp upstream
Tssr74299 transcription start site region 74299 1247 bp upstream
Tssr74300 transcription start site region 74300 992 bp upstream
Tssr74301 transcription start site region 74301 958 bp upstream
Tssr74302 transcription start site region 74302 867 bp upstream
Tssr74303 transcription start site region 74303 461 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory