rs258757176 SNP Detail

Summary

• ID
  rs258757176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34353032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGTGTGG TGGTGATGCT
  CATGCCCAGG GCAGGGCAGA TTTAGTTAGG AAAGAGGACT GAGGGGCCTG TCTGAAGTGG
  CAATTAAACC AAAACGTGAT GGATGACAAG AAGTCAGGCA TGTATAAGAC ACAGGGAGGT
  CTTGTGGCAA GTCAACTTTC CATGTACAAA GGCAGTCAGG AGTTAATGCA TTTGAGCTGT
  Y
  GAGGGGAGGT TCAGCAGGCT GGAGGGACTA CTCTGAGTTC TGCCCAGTCT CATACCCTGG
  CCTGGAGGCT CTTTCAACAT GGCCTCTACC ATTCTAGCAC CGTCTTCGAA CTTTACTTCT
  ATTTGTCCGT CTTCCCTCAC AAACTCATTC CGCCTAAACT TCCTGTGTTC CTGTCCCCTT
  GACATGCTCC GTTCCAGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400234912	MGP_WTSI_18_34379633	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258757176					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400234912	MGP_WTSI_18_34379633	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34353032 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	945 bp upstream
Cpgi9813	CpG island 9813	498 bp proximal
Rr370354	regulatory region 370354	813 bp upstream
Rr535610	regulatory region 535610	515 bp proximal
Rr535611	regulatory region 535611	938 bp proximal
Rr535612	regulatory region 535612	1016 bp proximal
Rr535613	regulatory region 535613	1369 bp proximal
Rr535614	regulatory region 535614	1678 bp proximal
Tssr150444	transcription start site region 150444	911 bp upstream
Tssr150445	transcription start site region 150445	975 bp upstream
Tssr150446	transcription start site region 150446	999 bp upstream
Tssr150447	transcription start site region 150447	1129 bp upstream
Tssr152786	transcription start site region 152786	1654 bp downstream