rs258757553 SNP Detail

Summary

• ID
  rs258757553
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32735271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGAGGC CAGGCCCGGC
  GCAGGCGAGG GAGATGAGAG ACGGCGGCGG CCACGGCCCA GAGCCCCTCT CAGCGCCTGT
  GAGCAGCCGC GGGGGCAGCG CCCTCGGGGA GCCGGCCGGG CGGCGGCGGC GGCAGCGGCG
  GCGGGCCTCG CCTCCTCGTC GTCTGTTCTA ACCGGGCAGC TTCTGAGCAG CTTCGGAGAG
  W
  GACGGTGGAA GAAGCCGTGG GCTCGAGCGG GAGCCGGCGC AGGCTCGGCG GCTGCACCTC
  CCGCTCCTGG AGCGGGGGGG AGAAGCGGCG GCGGCGGCCG CGGCTCCGGG GAGGGGGTCG
  GAGTCGCCTG TCACCATTGC CAGGGCTGGG AACGCCGGAG AGTTGCTCTC TCCCCTTCTC
  CTGCCTCCAA CACGGCGGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402294759	MGP_WTSI_19_32832361	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258757553					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402294759	MGP_WTSI_19_32832361	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32735271 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10762	CpG island 10762	within coordinates
Gm36566	predicted gene, 36566	459 bp upstream
Gm56634	predicted gene, 56634	1394 bp upstream
Gm56643	predicted gene, 56643	458 bp upstream
Gm58496	predicted gene, 58496	211 bp downstream
Gm58497	predicted gene, 58497	30 bp downstream
Pten	phosphatase and tensin homolog	within coordinates
Rr370486	regulatory region 370486	1189 bp downstream
Tssr5485	transcription start site region 5485	371 bp downstream
Tssr5486	transcription start site region 5486	176 bp downstream
Tssr5487	transcription start site region 5487	136 bp downstream
Tssr155992	transcription start site region 155992	284 bp downstream
Tssr155993	transcription start site region 155993	234 bp downstream
Tssr155994	transcription start site region 155994	212 bp downstream
Tssr155995	transcription start site region 155995	454 bp upstream
Tssr158898	transcription start site region 158898	1445 bp upstream
Tssr158899	transcription start site region 158899	533 bp upstream
Tssr158900	transcription start site region 158900	488 bp upstream