rs258762473 SNP Detail

Summary

• ID
  rs258762473
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112641577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGCATTTT TTGTTTTTCA TACAAGGGTC
  AGAGTTCACC AGGAGTGTAA ACAAGAGGGT AGATTTAGTA GTCCACGCTA TCGCCCAGGA
  TGGAAATCGG AGCTCCTTCT CGGGCTCCTG GGGCTGACCT GGGAAGCACA CCCCACTCCC
  K
  GAGAAGAACT CACTCTCCTC TCAGCCACGC CCCATACCCT TCAGACGGGG ATGGGGATGG
  GGGGCTCTGT TCTGTGCCCT ATCTGCTGCA CAGCTGCCCC AGCTCAGAGA GCCTCCAGGG
  CGCTAAGTCA GAGGCTCAGC AGCAGTTCTG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170087	CHEV_12_113913354	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258762473					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112641577 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	311 bp upstream
Cpgi5173	CpG island 5173	234 bp distal
Gm30150	predicted gene, 30150	within coordinates
Rr369631	regulatory region 369631	287 bp upstream
Rr473553	regulatory region 473553	878 bp distal
Rr473554	regulatory region 473554	722 bp distal
Rr473555	regulatory region 473555	743 bp distal
Rr473556	regulatory region 473556	within coordinates
Rr473557	regulatory region 473557	140 bp distal
Rr473558	regulatory region 473558	304 bp proximal
Rr473559	regulatory region 473559	495 bp proximal
Rr473560	regulatory region 473560	741 bp proximal
Tssr115391	transcription start site region 115391	720 bp downstream
Tssr117877	transcription start site region 117877	1116 bp upstream
Tssr117878	transcription start site region 117878	1057 bp upstream
Tssr117879	transcription start site region 117879	868 bp upstream
Tssr117880	transcription start site region 117880	776 bp upstream
Tssr117881	transcription start site region 117881	758 bp upstream
Tssr117882	transcription start site region 117882	379 bp upstream
Tssr117883	transcription start site region 117883	329 bp upstream
Tssr117884	transcription start site region 117884	306 bp upstream