rs258768619 SNP Detail

Summary

• ID
  rs258768619
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79953123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTCTGT ATGTTAGGGC
  AGCCTGCAGG ACTGTCCTAG CAGGAGGTCG TGCAGCCAAC TGCGCCTCCA GCCCCCCTCT
  TTGGGCCAGG TCCTGGCGCA AGTCGCGCCT GGCTTCTTTG GCGGGCGTTG CCAGGCGGGT
  GGCTAGTTTG TTTACGCAGC TAGAGGGAAC CGGTGGGGCC AAAAATAATG GTGAAGGGGG
  K
  GGGGGGGGTA GCCGGCCAGT GCTTGCGCAG GTCCCTGCGG TGTCGTGCGC GTAGTTGGCG
  TCGTTGGCCC GTGGGGACTC TTTATCGCCT GCTAGGCTTG GCGGAACTTG GAAAACTTCA
  CCTACCGGCT TCCAAGAAGG GGCCTTATCT TTGGGACCAG CACTGGCCAC ACTCTGCCTA
  ACTGACCTTG CCTCTGGTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss381014782	MGP_WTSI_10_79580034	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs258768619					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381014782	MGP_WTSI_10_79580034	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79953123 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1843	CpG island 1843	within coordinates
Rr225154	regulatory region 225154	within coordinates
Rr384985	regulatory region 384985	883 bp downstream
Stk11	serine/threonine kinase 11	within coordinates
Tssr94480	transcription start site region 94480	1465 bp downstream
Tssr94481	transcription start site region 94481	1403 bp downstream
Tssr94482	transcription start site region 94482	1023 bp downstream
Tssr94483	transcription start site region 94483	1011 bp downstream
Tssr94484	transcription start site region 94484	900 bp downstream
Tssr94485	transcription start site region 94485	6 bp upstream
Tssr98400	transcription start site region 98400	163 bp upstream
Tssr98401	transcription start site region 98401	697 bp downstream