rs258768827 SNP Detail

Summary

• ID
  rs258768827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117158581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCCTCT GAGGGGCTCT
  CAGGCAGCCT TAGGCAGAGC CCTCTGGTGG GCTGTGAGCG AGGGAGGAAG GGCTTCACAT
  AGTTAAAGAC GGCCAGGTTT CAGGCTCTTC AAGTGACCAG TTGGGGGTGC TCCAGGCCCC
  ATGACTGGAA CCAGGGGGTT TGTCCTGAGC CCACCTGAGG TCAGCCTTAT CTCTGAGTTA
  R
  GTGATTAGCT ATGTGTCAGG AAGTGGGTGG GGGGCGGGGG GCGGGGGGCG GGTGGTTGCT
  GATGAGTTGT GTATTGGCAG GTACAGGCTT TAGGAGCCTG GAATATCATA CCCACTTGGT
  CACCTCAGTG GTGGGAGCAA GTATCTGTGC TGAATCAAGG CATAGTCGCT GCTTAGGAGA
  TCTTGTGCCC CCAACCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss384872435	MGP_WTSI_11_117129069	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs258768827					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384872435	MGP_WTSI_11_117129069	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117158581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4205	CpG island 4205	983 bp distal
Cpgi4206	CpG island 4206	211 bp distal
Gm39478	predicted gene, 39478	1712 bp upstream
Rr246205	regulatory region 246205	within coordinates
Rr369453	regulatory region 369453	1899 bp downstream
Septin9	septin 9	within coordinates
Tssr106035	transcription start site region 106035	1566 bp downstream
Tssr106036	transcription start site region 106036	1489 bp downstream
Tssr106037	transcription start site region 106037	1457 bp downstream
Tssr106038	transcription start site region 106038	1283 bp downstream
Tssr112021	transcription start site region 112021	1755 bp upstream
Tssr112022	transcription start site region 112022	1701 bp upstream
Tssr112023	transcription start site region 112023	244 bp upstream