rs258770985 SNP Detail

Summary

• ID
  rs258770985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78635179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAAC CCAGTCCTGA GAAGAATGGG
  R
  AAAAAAAAAA ACAAGCAGGT TATTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319804034	CHEV_1_78654037	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258770985					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78635179 () rs orientation: forward

Symbol	Name	Function Class
Acsl3	acyl-CoA synthetase long-chain family member 3	421 bp upstream
Cpgi461	CpG island 461	32 bp proximal
Gm69507	predicted gene, 69507	16 bp downstream
Rr17618	regulatory region 17618	579 bp distal
Rr29694	regulatory region 29694	within coordinates
Rr371565	regulatory region 371565	1762 bp downstream
Rr396121	regulatory region 396121	235 bp upstream
Tssr7581	transcription start site region 7581	394 bp upstream
Tssr7582	transcription start site region 7582	412 bp upstream
Tssr12428	transcription start site region 12428	811 bp downstream
Tssr12429	transcription start site region 12429	828 bp downstream
Utp14b	UTP14B small subunit processome component	421 bp upstream