rs258773407 SNP Detail

Summary

• ID
  rs258773407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142206228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTGCAAG TTGACCTGTG
  ACTCCTCCTG ATTCTTCCAC CTAAAACCTC TCTGGGACCA CTTCCTACCC ATAGCTCCCC
  CCACCCAGCC CCCACTGCCC CCCACCCACC CCTCCAACCG CCAGACTTCC CACACTCCCC
  ACATCAGTGT GAGTCTCCTG GGGAGCCCCT AAAAAGCGGG GGCTCCCCAG GAGACTGACA
  R
  AGATGGCCCA TAGGTGTGCT CAGGGTAGGG GTTGTCCCCC AGATCTTTCC TCCCAGGAGC
  ACAACTAGGG GTCAGGTTAC TTGGGCAGCA TGTATCACTT GGCAGTGCCA TCTCCTTATC
  TGGCCAAACT TATTCTACAC TGGCTAGTCA TTGGTCCTCA TGGCGGGGGT GGTTGGGGAG
  CACCGGGCTC ACCATGTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454547	MGP_WTSI_7_149838396	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258773407					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454547	MGP_WTSI_7_149838396	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142206228 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	1794 bp proximal
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	422 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Rr167001	regulatory region 167001	1172 bp proximal
Tssr2462	transcription start site region 2462	555 bp upstream
Tssr2463	transcription start site region 2463	1353 bp downstream
Tssr70229	transcription start site region 70229	453 bp upstream
Tssr70230	transcription start site region 70230	585 bp upstream
Tssr70231	transcription start site region 70231	1062 bp upstream
Tssr70232	transcription start site region 70232	1098 bp upstream
Tssr70233	transcription start site region 70233	1148 bp upstream
Tssr70234	transcription start site region 70234	1174 bp upstream
Tssr70235	transcription start site region 70235	1210 bp upstream
Tssr70236	transcription start site region 70236	1242 bp upstream
Tssr70237	transcription start site region 70237	1338 bp upstream
Tssr70238	transcription start site region 70238	1357 bp upstream
Tssr70239	transcription start site region 70239	1501 bp upstream
Tssr70240	transcription start site region 70240	1822 bp upstream
Tssr75846	transcription start site region 75846	1679 bp upstream
Tssr75847	transcription start site region 75847	1400 bp upstream
Tssr75848	transcription start site region 75848	1366 bp upstream
Tssr75849	transcription start site region 75849	1146 bp upstream
Tssr75850	transcription start site region 75850	1100 bp upstream
Tssr75851	transcription start site region 75851	1087 bp upstream
Tssr75852	transcription start site region 75852	897 bp upstream
Tssr75853	transcription start site region 75853	856 bp upstream
Tssr75854	transcription start site region 75854	449 bp upstream
Tssr75855	transcription start site region 75855	265 bp upstream
Tssr75856	transcription start site region 75856	226 bp upstream
Tssr75857	transcription start site region 75857	211 bp upstream
Tssr75858	transcription start site region 75858	173 bp upstream
Tssr75859	transcription start site region 75859	117 bp upstream
Tssr75860	transcription start site region 75860	62 bp upstream
Tssr75861	transcription start site region 75861	30 bp upstream
Tssr75862	transcription start site region 75862	501 bp downstream
Tssr75863	transcription start site region 75863	520 bp downstream
Tssr75864	transcription start site region 75864	558 bp downstream
Tssr75865	transcription start site region 75865	581 bp downstream
Tssr75866	transcription start site region 75866	636 bp downstream
Tssr75867	transcription start site region 75867	679 bp downstream
Tssr75868	transcription start site region 75868	702 bp downstream
Tssr75869	transcription start site region 75869	712 bp downstream
Tssr75870	transcription start site region 75870	733 bp downstream
Tssr75871	transcription start site region 75871	774 bp downstream
Tssr75872	transcription start site region 75872	1175 bp downstream
Tssr75873	transcription start site region 75873	1197 bp downstream
Tssr75874	transcription start site region 75874	1406 bp downstream
Tssr75875	transcription start site region 75875	1443 bp downstream
Tssr75876	transcription start site region 75876	1475 bp downstream
Tssr75877	transcription start site region 75877	1551 bp downstream
Tssr75878	transcription start site region 75878	1827 bp downstream
Tssr75879	transcription start site region 75879	1849 bp downstream
Tssr75880	transcription start site region 75880	1899 bp downstream