rs258781446 SNP Detail

Summary

• ID
  rs258781446
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22712559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAATGCC CAGTGAACTA
  AATTGGGTTG AGAGTTTTCA AACTTTGGGG CATTTCAAGG TGTGAACGGG GAATACATAG
  ACAGGTGAAA CACTGAACTC CTCACAGGGT CCTGCAAGCT TCCCAAAATG CTTCCATCCT
  AGTGGTGACA GTTTCCCAGC CTCAGAATAG AAAGGCGGCA AACAGGAGAT AGGACTCTCT
  K
  TGCATCCAGG ACCCAGGAAG GTAGAAGATA AAGAGCCAAG GGAGGAGCAA GAGAAACCTT
  TAAGGACACA AACACTCAAA GAAAGGGAGA AAAGTGGGCA ACTAGAGAGA AGAAAGAATG
  AAGCAGAATG AAAGATAGCA AAGATAATAA ACCTTTCAAG ATAAAAGCTA GCCCTCAGAG
  TCACTTCTTT GTAAAGAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628325	MGP_WTSI_16_22893882	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258781446					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628325	MGP_WTSI_16_22893882	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22712559 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	within coordinates
Rr513335	regulatory region 513335	1760 bp distal
Rr513336	regulatory region 513336	173 bp proximal
Rr513337	regulatory region 513337	522 bp proximal
Tssr4818	transcription start site region 4818	985 bp downstream
Tssr4819	transcription start site region 4819	1522 bp upstream
Tssr137557	transcription start site region 137557	1758 bp downstream
Tssr137558	transcription start site region 137558	1228 bp downstream
Tssr137559	transcription start site region 137559	1032 bp downstream
Tssr137560	transcription start site region 137560	989 bp downstream
Tssr137561	transcription start site region 137561	964 bp downstream
Tssr137562	transcription start site region 137562	638 bp downstream
Tssr137563	transcription start site region 137563	420 bp upstream
Tssr137564	transcription start site region 137564	439 bp upstream
Tssr137565	transcription start site region 137565	504 bp upstream
Tssr137566	transcription start site region 137566	603 bp upstream
Tssr137567	transcription start site region 137567	968 bp upstream
Tssr137568	transcription start site region 137568	987 bp upstream
Tssr137569	transcription start site region 137569	1018 bp upstream
Tssr137570	transcription start site region 137570	1033 bp upstream
Tssr137571	transcription start site region 137571	1367 bp upstream
Tssr137572	transcription start site region 137572	1390 bp upstream
Tssr137573	transcription start site region 137573	1484 bp upstream
Tssr137574	transcription start site region 137574	1505 bp upstream
Tssr137575	transcription start site region 137575	1511 bp upstream
Tssr140501	transcription start site region 140501	1660 bp upstream
Tssr140502	transcription start site region 140502	1514 bp upstream
Tssr140503	transcription start site region 140503	1476 bp upstream
Tssr140504	transcription start site region 140504	541 bp downstream
Tssr140505	transcription start site region 140505	614 bp downstream
Tssr140506	transcription start site region 140506	1021 bp downstream
Tssr140507	transcription start site region 140507	1404 bp downstream
Tssr140508	transcription start site region 140508	1448 bp downstream
Tssr140509	transcription start site region 140509	1467 bp downstream
Tssr140510	transcription start site region 140510	1482 bp downstream
Tssr140511	transcription start site region 140511	1525 bp downstream