rs258782587 SNP Detail

Summary

• ID
  rs258782587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79754234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTTACCT GTGTTCTGGG
  GAGGTGGGGG GGGAGGCAGG GAGTGAATCA CAGAAGTCAA GATCACTGTG TGCACTGTAG
  GAATAGACCC GTGGCAGTTG AGTCAACCCT GGGGGGCGGG GGGTGACCTA ATCTTATTTT
  CCCTCTTTAT CAAGAACCTG TAATTTTAGT TTTGGCTGAA TTTTCAAGTG TTAACTCCAC
  Y
  GGACCCTCTA AAATTGGGTA TCCATGCCAC CCATCCACTG ATCCCACCCT ATGCTATCTT
  TTCATTTTTT TTTTTTTTAA AAAAGATTTA TTTCCATTAG GCTGTTTTAA GGGAGTATGT
  GAGAGTCTGT AACGTCCAGA CTCAAGGTGA TGGGGTGAGA GAGTCAGTCT TTCAGTTACA
  AAAGCCTGGG GAATTTTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375274847	MGP_WTSI_8_81551504	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258782587					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375274847	MGP_WTSI_8_81551504	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79754234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20619	CpG island 20619	297 bp proximal
Cpgi20620	CpG island 20620	1082 bp proximal
Rr186908	regulatory region 186908	within coordinates
Rr400985	regulatory region 400985	701 bp upstream
Tssr2612	transcription start site region 2612	746 bp upstream
Tssr78123	transcription start site region 78123	364 bp upstream
Tssr78124	transcription start site region 78124	573 bp upstream
Tssr78125	transcription start site region 78125	648 bp upstream
Tssr78126	transcription start site region 78126	712 bp upstream
Tssr78127	transcription start site region 78127	960 bp upstream
Tssr78128	transcription start site region 78128	1024 bp upstream
Zfp827	zinc finger protein 827	832 bp upstream