rs258784297 SNP Detail

Summary

• ID
  rs258784297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96514881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGAGAAA GTGAGCTTAC
  CTCTCCTTCC AGGCATTTTG TTGTTTCAAA CAGAAACTCC AAATGGTATT TCCCTTTCTT
  TCCAAATCAG AGCTCACACA CCACAGGCCA GAGACTGGCT TTTTCTATTT TAAAACGTTT
  AATGCTTTAT TGGTATGTCT TACTTATACA CAGTCATGGT GTGATACCGT TTTCATACAC
  R
  TGTTTAATGT ATGCATAGTA TTCAATACCC TCTTCATCGC CGTCCACATC CCCTGCACCC
  CCTTCCTCTC CTCCCAGCTG GCTTTCTTCC CCTCCAATCC CCTGGAAGGT CAGTGGATGG
  CTGTTGGGAG GTGGTTCTCC TTTCACCGTG GGTTTCCTAG GGATTAACCC GGCCATCTGG
  TTTGGTATTA AGAACCTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323111054	CHEV_9_96533247	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258784297					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96514881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22167	CpG island 22167	845 bp distal
Rasa2	RAS p21 protein activator 2	1216 bp upstream
Rr684997	regulatory region 684997	721 bp distal
Tssr86611	transcription start site region 86611	1798 bp downstream
Tssr90974	transcription start site region 90974	1928 bp upstream
Tssr90975	transcription start site region 90975	1632 bp upstream
Tssr90976	transcription start site region 90976	1274 bp upstream