rs258786410 SNP Detail

Summary

• ID
  rs258786410
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24598752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAACCACA GCCCAGTGGA GGAGTTAAAA
  CAAAAATAAT AATTACACAG AAggcatagt gactcaagcc tctaatccca acactgggaa
  ggaaggatgg tgagttcaag acaagcctgg gctataaaga gagtctcagg ctagtcagag
  M
  tatgtagcag gtcttgGGGG TACTTTGGGA GACAATTATA GCAAGAATAA GCTTAGCCCA
  ACTGCTGCAA GAGCTATTCA CTTTTGAGCT GGAACCTTAG GCCAGTGATT CAGACCCAAA
  TGAAGAAGGA ACCTAAAGGT TAGCTCTTAG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321495652	CHEV_5_23899572	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258786410					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24598752 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Atg9b	autophagy related 9B	1611 bp upstream
Cpgi15597	CpG island 15597	482 bp proximal
Rr112283	regulatory region 112283	152 bp distal
Rr124925	regulatory region 124925	48 bp proximal
Rr398998	regulatory region 398998	45 bp downstream
Rr398999	regulatory region 398999	415 bp upstream
Tssr45411	transcription start site region 45411	90 bp downstream
Tssr45412	transcription start site region 45412	634 bp upstream
Tssr50315	transcription start site region 50315	1793 bp upstream
Tssr50316	transcription start site region 50316	1747 bp upstream
Tssr50317	transcription start site region 50317	1723 bp upstream
Tssr50318	transcription start site region 50318	1260 bp upstream
Tssr50319	transcription start site region 50319	1056 bp upstream