rs258787616 SNP Detail

Summary

• ID
  rs258787616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11889901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAATTTC CTTCATATTA
  TGCAGCCACC AGCTTTTATT TCTGTAAAAG TTGCCATGTT TGCAAGAGCT GCTTCTTATA
  CACATCCTCT TGGTTATTAA ATGCCAACCA CATTTGTTTA CAAATAAAAC CAAGTTAATG
  AAATACTGCA TCTACATTAG CAAGAGCTGA GAGCACTGCG GCCTCCGCAG GCTCCAGAGC
  Y
  TTGTGCTGGC CTTCAGTGGT GTACCTCAGG GAGGGTCCCC ACAGAGCATT GCAGTTAGAA
  AGGGGACCAT CTCCAGCAGC TCACTTCCCA GCCCTGACCT ACTTGGGATT CTTGCAACAC
  CTGGAAAATA CTGAAACATA TGGCAGTTTC CAGCAAGGAG CAAAAGGAAG GTTGTCACTG
  TCACAGCCCC CTTCCAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322494109	CHEV_8_11839901	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258787616					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11889901 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	within coordinates
Rr659647	regulatory region 659647	1330 bp proximal
Tex29	testis expressed 29	587 bp upstream
Tssr76253	transcription start site region 76253	600 bp upstream
Tssr76254	transcription start site region 76254	613 bp upstream
Tssr76255	transcription start site region 76255	667 bp upstream