rs258792801 SNP Detail

Summary

• ID
  rs258792801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:59022027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCCAAgga gctggagagc tggctcagag
  gttaagagca ctgactgctc ttcccaaggc catgagttca attcccagca accacatggt
  ggctcacaac catctgtaat gggatttgat gccttcttct ggtgtgtctg aagacagcta
  Y
  gatgtactca tatacataaa aaaagaaaAA GTGCggggct ggtgagatgg ctcagtgggt
  aagagcaccc gactgctctt ccaaaggtcg gaagttcaaa ttccagcaac cacatggtgg
  ctcacaacca tccgatcacg agatctgact                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324055319	CHEV_12_60076228	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258792801					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:59022027 () rs orientation: forward

Symbol	Name	Function Class
Rr256936	regulatory region 256936	within coordinates
Rr256937	regulatory region 256937	1774 bp proximal
Sec23a	SEC23 homolog A, COPII coat complex component	within coordinates
Tssr116440	transcription start site region 116440	1113 bp downstream