rs258792881 SNP Detail

Summary

• ID
  rs258792881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82423421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG TGATGGTGGG TGGTGAAATG
  Y
  TTTTTTTAAA AAAAGGCGGG GAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321185682	CHEV_4_82151088	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258792881					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82423421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14398	CpG island 14398	within coordinates
Gm57123	predicted gene, 57123	599 bp downstream
Nfib	nuclear factor I/B	within coordinates
Tssr37680	transcription start site region 37680	739 bp upstream
Tssr42247	transcription start site region 42247	286 bp upstream
Tssr42248	transcription start site region 42248	38 bp downstream
Tssr42249	transcription start site region 42249	60 bp downstream
Tssr42250	transcription start site region 42250	90 bp downstream
Tssr42251	transcription start site region 42251	186 bp downstream
Tssr42252	transcription start site region 42252	412 bp downstream
Tssr42253	transcription start site region 42253	495 bp downstream
Tssr42254	transcription start site region 42254	534 bp downstream
Tssr42255	transcription start site region 42255	565 bp downstream
Tssr42256	transcription start site region 42256	619 bp downstream
Tssr42257	transcription start site region 42257	649 bp downstream
Tssr42258	transcription start site region 42258	674 bp downstream
Tssr42259	transcription start site region 42259	1248 bp downstream