rs258797135 SNP Detail

Summary

• ID
  rs258797135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98811497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGCAGCTA GCAAAGCGCA
  TCAGCCATTT TCCGAGCGTC TTTGGTAACC CTTCCGGAGA GGGCACGCCA GGAGGGGGAA
  GAAAAAAAAA AAAAAAGAAA GAAAGAGGCG GGCCTGCACC GGGGCCTCGG CCCAGAAGCC
  ACACCCTCCG GGCTCGCCAC CTCCCCATGC TAACAAAACG GAAAGCGGAA CCCTAACCTC
  R
  GCAGAGAAAG CGCGCACTGG AGCGCCAATG AGCTTGCAAA GAGCCGCTCC AGGGCGCCGT
  ATGCTCTCCC GGGATTGGCT GGGCCTCGTT CCTTGTACTT TTTTTATTGG TCAGACTGTC
  TTCTCTGCCG GCTAATTGTT TTATTCGTAT AGGTACTTTT TGATTGGCTC TTCCTGGTGG
  GGCGGAGGAA TGAGGTTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362556699	MGP_WTSI_4_98589951	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258797135					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362556699	MGP_WTSI_4_98589951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98811497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	within coordinates
Rr398351	regulatory region 398351	within coordinates
Rr595805	regulatory region 595805	941 bp distal
Rr595806	regulatory region 595806	60 bp proximal
Rr595807	regulatory region 595807	350 bp proximal
Rr595808	regulatory region 595808	630 bp proximal
Tssr37901	transcription start site region 37901	323 bp downstream
Tssr37902	transcription start site region 37902	399 bp upstream
Tssr37903	transcription start site region 37903	464 bp upstream
Tssr37904	transcription start site region 37904	491 bp upstream
Tssr37905	transcription start site region 37905	555 bp upstream
Tssr37906	transcription start site region 37906	585 bp upstream
Tssr37907	transcription start site region 37907	648 bp upstream
Usp1	ubiquitin specific peptidase 1	550 bp upstream