rs258797620 SNP Detail

Summary

• ID
  rs258797620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26726633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCTAGTA TAAATAAAGC
  TGCAGCCGCT TTCTATATCC TCCTGGCACA ATCCTCCTAG ACCTCTGCCA GCTCTGCCAC
  CTCCCTGCCC TGCATGGACC CGGACTCCTA CTAACCTGAT CGTAGAGAGG GGTACTACAG
  GAGCTGCATC CGGATTCTGC ACTGTCAGGC ACACTAGTAC TCAGGGGGAG GCTGAGCCCC
  R
  TGGGGGTGGA CTGTTTGCTG CACAGCTCAG GGCAGGAAGC CGAAAACGCT TCATATCCTC
  CTGAGAATAC AAAGGTACAT ATTTTCTCAT TAGCACCACC GACACAGTAC CTGGAGACAA
  GCCACTCACC CACCAGGGGC TGCGAGTTTA CAAGGAAGGC TTAAGGAAGT CTTTGTTATG
  GGAGTGAAAC AAAGCCACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397901201	MGP_WTSI_17_26644604	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258797620					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397901201	MGP_WTSI_17_26644604	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26726633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8810	CpG island 8810	309 bp distal
Cpgi8811	CpG island 8811	within coordinates
Dusp1	dual specificity phosphatase 1	within coordinates
Gm56886	predicted gene, 56886	877 bp upstream
Rr339410	regulatory region 339410	within coordinates
Rr405112	regulatory region 405112	773 bp upstream
Rr405113	regulatory region 405113	1145 bp upstream
Rr406958	regulatory region 406958	1193 bp proximal
Tssr5044	transcription start site region 5044	1292 bp upstream
Tssr5045	transcription start site region 5045	1804 bp downstream
Tssr5046	transcription start site region 5046	1857 bp downstream
Tssr5047	transcription start site region 5047	1866 bp downstream
Tssr143230	transcription start site region 143230	1288 bp downstream
Tssr143231	transcription start site region 143231	158 bp downstream
Tssr143232	transcription start site region 143232	989 bp upstream
Tssr143233	transcription start site region 143233	1038 bp upstream
Tssr143234	transcription start site region 143234	1090 bp upstream
Tssr146939	transcription start site region 146939	1692 bp upstream
Tssr146940	transcription start site region 146940	1662 bp upstream
Tssr146941	transcription start site region 146941	1493 bp upstream
Tssr146942	transcription start site region 146942	1471 bp upstream
Tssr146943	transcription start site region 146943	1389 bp upstream
Tssr146944	transcription start site region 146944	1264 bp upstream
Tssr146945	transcription start site region 146945	1201 bp upstream
Tssr146946	transcription start site region 146946	1143 bp upstream
Tssr146947	transcription start site region 146947	1122 bp upstream
Tssr146948	transcription start site region 146948	1096 bp upstream
Tssr146949	transcription start site region 146949	1028 bp upstream
Tssr146950	transcription start site region 146950	487 bp upstream
Tssr146951	transcription start site region 146951	within coordinates
Tssr146952	transcription start site region 146952	530 bp downstream
Tssr146953	transcription start site region 146953	555 bp downstream
Tssr146954	transcription start site region 146954	804 bp downstream
Tssr146955	transcription start site region 146955	1205 bp downstream
Tssr146956	transcription start site region 146956	1835 bp downstream
Tssr146957	transcription start site region 146957	1900 bp downstream