About   Help   FAQ
rs258798143 SNP Detail
Summary
  • ID
    rs258798143
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:93351620 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGCTAAGGC GCGAGCAGGA
GCTGAGGCAG GAGCTGAGGC GCGAGCAGGA GCTAAGGCGC GAGCAGGAGT TGAGGCAGGA
ACTGAGGCGC GAGCAAGAGC TAAGGCGCGA GCAGGAGTTG AGGCAGGAAC TGAGGCGCGA
GCAAGAGCTA AGGCGCGAGC AGGAGTTGAG GCAGGAACTG AGGCGTGAGC AAGAGCTAAG
R
CGCGAGCAAG AGCTGAGGCA GGAGCTGGCT GAGGAGGACG AGCTGACGCG GATCCGGGAA
CCCGACGAGA GCATTACCCA GAGGTGGCAG TGGCAGCTCG AAAACGAGGC AGACGCCCGT
CAGAACAAGG TCTACTCTAG GCCTAGCAGG CAGGAGCAGA GGCTTCGCCA GGAGCTGGGG
GAGCGTCAGC TCCGGGAGCA                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876319 MGP_WTSI_3_93248235 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258798143 SNP A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876319 MGP_WTSI_3_93248235 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93351620 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 883 bp downstream
Tssr961 transcription start site region 961 307 bp downstream
Tssr962 transcription start site region 962 810 bp upstream
Tssr963 transcription start site region 963 847 bp upstream
Tssr964 transcription start site region 964 943 bp upstream
Tssr30345 transcription start site region 30345 1924 bp downstream
Tssr30346 transcription start site region 30346 1899 bp downstream
Tssr30347 transcription start site region 30347 840 bp downstream
Tssr30348 transcription start site region 30348 820 bp downstream
Tssr30349 transcription start site region 30349 808 bp downstream
Tssr30350 transcription start site region 30350 764 bp downstream
Tssr30351 transcription start site region 30351 740 bp downstream
Tssr30352 transcription start site region 30352 690 bp downstream
Tssr30353 transcription start site region 30353 671 bp downstream
Tssr30354 transcription start site region 30354 656 bp downstream
Tssr30355 transcription start site region 30355 637 bp downstream
Tssr30356 transcription start site region 30356 583 bp downstream
Tssr30357 transcription start site region 30357 528 bp downstream
Tssr30358 transcription start site region 30358 410 bp downstream
Tssr30359 transcription start site region 30359 384 bp downstream
Tssr30360 transcription start site region 30360 354 bp downstream
Tssr30361 transcription start site region 30361 29 bp downstream
Tssr30362 transcription start site region 30362 13 bp downstream
Tssr30363 transcription start site region 30363 121 bp upstream
Tssr30364 transcription start site region 30364 192 bp upstream
Tssr30365 transcription start site region 30365 227 bp upstream
Tssr30366 transcription start site region 30366 279 bp upstream
Tssr30367 transcription start site region 30367 323 bp upstream
Tssr30368 transcription start site region 30368 340 bp upstream
Tssr30369 transcription start site region 30369 353 bp upstream
Tssr30370 transcription start site region 30370 360 bp upstream
Tssr30371 transcription start site region 30371 380 bp upstream
Tssr30372 transcription start site region 30372 393 bp upstream
Tssr30373 transcription start site region 30373 444 bp upstream
Tssr30374 transcription start site region 30374 462 bp upstream
Tssr30375 transcription start site region 30375 475 bp upstream
Tssr30376 transcription start site region 30376 501 bp upstream
Tssr30377 transcription start site region 30377 523 bp upstream
Tssr30378 transcription start site region 30378 556 bp upstream
Tssr30379 transcription start site region 30379 574 bp upstream
Tssr30380 transcription start site region 30380 654 bp upstream
Tssr30381 transcription start site region 30381 672 bp upstream
Tssr30382 transcription start site region 30382 731 bp upstream
Tssr30383 transcription start site region 30383 742 bp upstream
Tssr30384 transcription start site region 30384 751 bp upstream
Tssr30385 transcription start site region 30385 767 bp upstream
Tssr30386 transcription start site region 30386 788 bp upstream
Tssr30387 transcription start site region 30387 879 bp upstream
Tssr30388 transcription start site region 30388 905 bp upstream
Tssr30389 transcription start site region 30389 919 bp upstream
Tssr30390 transcription start site region 30390 991 bp upstream
Tssr30391 transcription start site region 30391 1010 bp upstream
Tssr30392 transcription start site region 30392 1028 bp upstream
Tssr30393 transcription start site region 30393 1045 bp upstream
Tssr30394 transcription start site region 30394 1065 bp upstream
Tssr30395 transcription start site region 30395 1090 bp upstream
Tssr30396 transcription start site region 30396 1139 bp upstream
Tssr30397 transcription start site region 30397 1156 bp upstream
Tssr30398 transcription start site region 30398 1231 bp upstream
Tssr30399 transcription start site region 30399 1278 bp upstream
Tssr30400 transcription start site region 30400 1763 bp upstream
Tssr30401 transcription start site region 30401 1783 bp upstream
Tssr30402 transcription start site region 30402 1882 bp upstream
Tssr30403 transcription start site region 30403 1922 bp upstream
Tssr34352 transcription start site region 34352 429 bp upstream
Tssr34353 transcription start site region 34353 423 bp upstream
Tssr34354 transcription start site region 34354 372 bp upstream
Tssr34355 transcription start site region 34355 275 bp upstream
Tssr34356 transcription start site region 34356 392 bp downstream
Tssr34357 transcription start site region 34357 437 bp downstream
Tssr34358 transcription start site region 34358 489 bp downstream
Tssr34359 transcription start site region 34359 558 bp downstream
Tssr34360 transcription start site region 34360 639 bp downstream
Tssr34361 transcription start site region 34361 660 bp downstream
Tssr34362 transcription start site region 34362 709 bp downstream
Tssr34363 transcription start site region 34363 736 bp downstream
Tssr34364 transcription start site region 34364 753 bp downstream
Tssr34365 transcription start site region 34365 767 bp downstream
Tssr34366 transcription start site region 34366 827 bp downstream
Tssr34367 transcription start site region 34367 960 bp downstream
Tssr34368 transcription start site region 34368 1039 bp downstream
Tssr34369 transcription start site region 34369 1064 bp downstream
Tssr34370 transcription start site region 34370 1078 bp downstream
Tssr34371 transcription start site region 34371 1132 bp downstream
Tssr34372 transcription start site region 34372 1895 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory