rs258801033 SNP Detail

Summary

• ID
  rs258801033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133854863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCACCAG AACTATCTGC
  CTCTGCCAGG CAGGGACCCG GACACCACAA GCAGTCAGCA CCAGAGGAAT GGACATTTAA
  TTGTCTCTAG GGCACTCCTA GGATGGGGAT GCGGGGCCTT TGGCAGAGCT CTGGCTGATG
  GAAGCAACAG AAATGCTCAT CAGACAGGGC CAGGCAGAGA GGATGCCCCA AGGTGTGGCT
  R
  GGGACAGCCA TCGTCAGGGC TTAAGACAAT CTTTTGAGAC TAGTTGGTGA ATAAGGAATG
  TTGCCTCTGG AGGAAGAGGA GGCGGCTGCG GAAAGGGTCT GGGTCTGGGT TTGCAGATTA
  GGACGACAAG GAGTTGGTTA CAAGGCCTGG TGAAGAGCTA GCTGGATAGG ATCGGTGGCC
  ATCCTGACTC AGGCCAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363332264	MGP_WTSI_4_133683467	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258801033					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363332264	MGP_WTSI_4_133683467	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133854863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15028	CpG island 15028	700 bp proximal
Gm68742	predicted gene, 68742	1391 bp downstream
Rr601575	regulatory region 601575	1177 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	within coordinates
Tssr39535	transcription start site region 39535	within coordinates
Tssr39536	transcription start site region 39536	66 bp upstream
Tssr39537	transcription start site region 39537	356 bp upstream
Tssr43866	transcription start site region 43866	75 bp downstream
Tssr43867	transcription start site region 43867	135 bp downstream
Tssr43868	transcription start site region 43868	171 bp downstream
Tssr43869	transcription start site region 43869	246 bp downstream
Tssr43870	transcription start site region 43870	399 bp downstream
Tssr43871	transcription start site region 43871	447 bp downstream
Tssr43872	transcription start site region 43872	477 bp downstream
Tssr43873	transcription start site region 43873	500 bp downstream
Tssr43874	transcription start site region 43874	530 bp downstream
Tssr43875	transcription start site region 43875	1128 bp downstream
Tssr43876	transcription start site region 43876	1155 bp downstream
Ubxn11	UBX domain protein 11	768 bp downstream