rs258806900 SNP Detail

Summary

• ID
  rs258806900
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13263743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACAGAAA GCCCACAGAT
  GACTATTTTC TGCCATCTGC TTCATCTGTG GTGGTTTCAC CTCATCCTGC GGCCTTCTGT
  TGAACTCTCA GAGGCACTGA GGAGCCCTGA CAGAGGGCAG GAAGTGGCTA AACGAGAGTG
  CTTTTCCATC CTCTCAAGGC AGAACAAAAC CACAATACTC CCCTCTGCTG AAGGGGCCAT
  W
  TTGGGGGCTG GGCCAGGGGC CGGAAGTATG TTCCTCCTAG AAGACAACAT CAGGCCAGGG
  CATGGAAGGC CCAACCCCTG CCACAACCAT ACCAGTAGGC ATTGTGCTCA GCAATGTTTT
  AGTGCTAAAT GCAGTGTCCC ATTTAGAGTT CTAGGTCTTA CCCCATCTCC CTAGAAACCC
  AGGCAATGAC CTGTGAATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505132	CHEV_8_13213743	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258806900					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13263743 () rs orientation: forward

Symbol	Name	Function Class
Gm63815	predicted gene, 63815	within coordinates
Rr368495	regulatory region 368495	within coordinates
Rr368496	regulatory region 368496	229 bp upstream
Rr659886	regulatory region 659886	238 bp distal
Rr659887	regulatory region 659887	280 bp distal
Rr659888	regulatory region 659888	290 bp proximal
Rr659889	regulatory region 659889	340 bp proximal