rs258814927 SNP Detail

Summary

• ID
  rs258814927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88274569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAATTCTG GCCTTTTTAT
  ATTTCTGCCT GAAGCTGAAA ATAGTTTGTA ATTCACCTGA TGTAGTTGAA AGACTCCGTG
  AGGAGCCCCT CGCTCAGGCC TTGGGACAAT AGTGGACACC CAAGAACTCA CGAGAGACCA
  AGCTTGATGC AAACCACATG AGGCTTTATT TGAGGAAAGC CAGAGCTCTG GGCATGACTC
  R
  TATCCCACGC AGGGGTAGAG GAGTTGTCCT CGAGGGGAAA GAGGTCCCAG TTTTTATAGG
  CCCTCAGGGG GGAAAGGGGA AGGGGGAAGT AGGGGATTTC CAGATCTAAA CAATGTCTAT
  TCTCAAGAAA TGGGTATGGG AGGGGTACAA GGAAAGAGTC TGGTGCAGGT GTAGCAACTC
  CGGATTGGCC CGGCTGTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325500503	CHEV_17_88366481	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258814927					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88274569 () rs orientation: forward

Symbol	Name	Function Class
Gm50041	predicted gene, 50041	1863 bp downstream
Rr333904	regulatory region 333904	1232 bp proximal
Rr343663	regulatory region 343663	1345 bp proximal
Rr393088	regulatory region 393088	1424 bp downstream