rs258815708 SNP Detail

Summary

• ID
  rs258815708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184545597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGTTCA TGGTTTCTCC
  TTGTTCCTTC TTCCGAAGGA AGATTCCATT CCTTTAAGGT CCACTCTCTT GTAGAATTGG
  AAGAATTCAC AATTATAGAT AAGTTCTACC TGTCTTGATA GGAACAGAAT GAAATGTAAA
  GCCACAGTCT ATGAACAAAA TAACCCCATG ACCTCTGAAG TCATTTCTGT ATGTAAGCAT
  R
  CTTCTATAAC AGCAAGGTAA ACAATAATGA AACCAAACTC AGCAGGGCTC AACAGCCAGG
  CCAAGACCGG CCAACAGGCT TTCGTGAGCA TGCGAGCACA TCAGATATGT GCACATTCCC
  TGCACATTCA GGGCAAGAGG GCTCCTTTTC TTACCTTTCT CAAGCGACAG ACCTACTGAA
  AAGTATAAAC ATTTTTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169586	CHEV_1_186637279	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258815708					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184545597 () rs orientation: forward

Symbol	Name	Function Class
Gm70890	predicted gene, 70890	538 bp downstream
Mtarc2	mitochondrial amidoxime reducing component 2	mRNA-UTR
Rr425290	regulatory region 425290	1466 bp distal
Rr425291	regulatory region 425291	960 bp distal
Rr425292	regulatory region 425292	1031 bp distal
Rr425293	regulatory region 425293	883 bp distal
Rr425294	regulatory region 425294	1045 bp proximal