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rs258822518 SNP Detail
Summary
  • ID
    rs258822518
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr5:115626766 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAAAACGGGG TTGAAGTTGA
    TTTGGGGCCC TTTAATCTTC AACACTGGGA AGGCAGAGGC AGAAGGGTCT CTATGAGTTT
    GAAGACAGCC TGGTCTACAG AGCAAATTCC AGGTCAGCCA GGGAGACCAT TGTGTCTCAA
    AACAACAAAC AAACAAATCT TCACTTAGAA TTAAACCTAG AATTCCTGTA TGAGCCAGCA
    R
    CTCCACTACT AGTATATACC CCAAACAATT GAAGACAGGG GCTGGGCTGG TGAGACAGAT
    TGTGGGTAAA CCTCCCCTGA ATTCAATCCC TGGGACCCAG GTGGTGGAAG GAGAGAACTG
    TCTCCCACAA GTGGTCCTCT GACCTCCACA CACTTACACA CACAGTGTTT TCAGATGTGT
    AAAGTCTCTA GCGTGAGAGC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss366357713 MGP_WTSI_5_115938716 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258822518 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss366357713 MGP_WTSI_5_115938716 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:115626766 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi16375 CpG island 16375 1114 bp proximal
Gm24265 predicted gene, 24265 752 bp upstream
Gm24407 predicted gene, 24407 1547 bp upstream
Gm57305 predicted gene, 57305 926 bp downstream
Rr1425 regulatory region 1425 within coordinates
Rr108333 regulatory region 108333 366 bp distal
Rr124163 regulatory region 124163 within coordinates
Tssr48292 transcription start site region 48292 603 bp upstream
Tssr48293 transcription start site region 48293 749 bp upstream
Tssr48294 transcription start site region 48294 824 bp upstream
Tssr48295 transcription start site region 48295 1524 bp upstream
Tssr48296 transcription start site region 48296 1619 bp upstream
Tssr52808 transcription start site region 52808 215 bp downstream
Tssr52809 transcription start site region 52809 237 bp downstream
Tssr52810 transcription start site region 52810 846 bp downstream
Tssr52811 transcription start site region 52811 1123 bp downstream
Tssr52812 transcription start site region 52812 1236 bp downstream
Tssr52813 transcription start site region 52813 1248 bp downstream
Tssr52814 transcription start site region 52814 1284 bp downstream
Tssr52815 transcription start site region 52815 1478 bp downstream
Tssr52816 transcription start site region 52816 1637 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory