rs258822572 SNP Detail

Summary

• ID
  rs258822572
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144102267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAGTGGAC CCCAATTTCC TAGATAACAG AGTGAGTGGC
  TCTATTTGGA AGACTGGATC TCGAAGGTTA CAATCAACCC TCCATCTAAA CCCCCCCCCC
  M
  CACACACACA CACACCTCCA CACACCTCAA GACCCAGAAA AGAGACAAAG AAGTCAACAG
  CTACACAGCG AAAGGGTGGG AACCAATTCC CGCTTCAGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321006058	CHEV_3_144059470	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258822572					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144102267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13898	CpG island 13898	66 bp proximal
Gm65349	predicted gene, 65349	within coordinates
Rr586642	regulatory region 586642	1014 bp distal
Rr586643	regulatory region 586643	within coordinates
Rr586644	regulatory region 586644	213 bp proximal