rs258824018 SNP Detail

Summary

• ID
  rs258824018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49340834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGCCTC GCCCTTGGCC
  TCACTTTTAA ACAGATCAAG TGCTTATGTT CAAAGTTCAG AGGGGGGCCC GTTTGATCAA
  CAACTTTGAG ACAGGGTCCC TGGGGACCCC CGATGTCATC GCGAGGACAG GCGCTGGGCT
  GCTTGCCCTA GCCATCGTGA AGGAGCCTGA GAATTGGGGA CATCAAGGCC GCTGGAGAAG
  Y
  GCTATCCTGC TCAGGCGCGA TTCCAGCAGC TGGCGTCTAG GCCCCGGCCC GCCCCGGGTG
  GAGGCGGAGT CCGGGGGCGG CCGCGCGCGG GGGGCGTGTC GGGGGCGGGC CGGGGGCGGG
  CCGGGGGCGG GCGCACAGCC GTAGCCCGTG GCGGAGGCGC GGGTGCGCTC AGGCCGTGTG
  CTGGGCGGCC CGGGCGGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388559516	MGP_WTSI_13_49282727	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258824018					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388559516	MGP_WTSI_13_49282727	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49340834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5580	CpG island 5580	within coordinates
Ninj1	ninjurin 1	171 bp upstream
Rr479364	regulatory region 479364	within coordinates
Rr479365	regulatory region 479365	178 bp proximal
Tssr119678	transcription start site region 119678	127 bp upstream
Tssr119679	transcription start site region 119679	798 bp upstream
Tssr119680	transcription start site region 119680	844 bp upstream
Tssr119681	transcription start site region 119681	887 bp upstream
Tssr119682	transcription start site region 119682	1150 bp upstream
Tssr122445	transcription start site region 122445	555 bp downstream
Tssr122446	transcription start site region 122446	580 bp downstream
Tssr122447	transcription start site region 122447	595 bp downstream
Tssr122448	transcription start site region 122448	639 bp downstream
Tssr122449	transcription start site region 122449	655 bp downstream