rs258828055 SNP Detail

Summary

• ID
  rs258828055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30825666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCAGGG CTGTATTCCG
  TCGTTTTCCC ACCACTGTAT GTCTCGCCAT TACTATTACT GTTGTTGTTT TAAACTCCAT
  CTGGCAGGCA TTCTGTTCCT GGGACTGCCT CTCTATCTCC ATCCCTTCCT GGTCTCTCCA
  GATCTTTCTG CTGCTCTCAA GTTTCTCTGT TCCTGGCTCC GGTTCCTAAC TCTCTCCCTC
  Y
  AATGTCCCTG TCTGCCCCAG TCTGTCTCTC AGTTTACCTC CACGTCCAGG GCATGCCCGG
  AGTCCTCACT CGGTATCCAT GCCTCCCGGT TCGTTTCGGG CCCCAGTCCC AGGCGCTGCC
  TTCCCCCACC CCTCACGCGG CTGTGGGTGT CACATTGCAG CCTGCGGGGC TCTGCAAGCA
  GCTGACTCCG CGTCTCCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370923209	MGP_WTSI_7_31911260	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258828055					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370923209	MGP_WTSI_7_31911260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30825666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	816 bp distal
Cpgi18837	CpG island 18837	within coordinates
Rr645025	regulatory region 645025	within coordinates
Rr645026	regulatory region 645026	593 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	475 bp downstream
Tssr71936	transcription start site region 71936	518 bp downstream
Tssr71937	transcription start site region 71937	680 bp downstream
Tssr71938	transcription start site region 71938	709 bp downstream
Tssr71939	transcription start site region 71939	752 bp downstream
Tssr71940	transcription start site region 71940	923 bp downstream