rs258835049 SNP Detail

Summary

• ID
  rs258835049
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17813361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAAACGGT TCTCAGAAAC CATCTGTGCC
  CTCGTGCTTC AGCAGTATTA GTGGGCACCT TCCTGTCCCG CAGCCTTGAA GCACCGTGTG
  AACGCCCCCA AACGCCCCTA GGGCCCTCCC ACCTTGGCTT TACTTTCAAT TCTAGTCGCG
  K
  CAGAGCCGCG GCAGGGCTCC CTCCCTGGAT CAGTTCCAAA GAAGTTGTGA GGTCCTTAGG
  AGGGGCATTT AACGGAGCCC TCTCCAGTCC AGTTTTTGGT AGGGACATGG GGAAGAGGAC
  ATTGAAATCC AGGCCATTTA AGCCAGAATA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325730787	CHEV_19_17910487	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258835049					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17813361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	within coordinates
Cpgi10666	CpG island 10666	496 bp proximal
Pcsk5	proprotein convertase subtilisin/kexin type 5	within coordinates
Rr544885	regulatory region 544885	within coordinates
Rr544886	regulatory region 544886	1579 bp proximal
Rr544887	regulatory region 544887	1625 bp proximal
Tssr158513	transcription start site region 158513	1623 bp downstream