rs258838656 SNP Detail

Summary

• ID
  rs258838656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128582027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATAAGGA ATATGAAGAG
  AAACTCAGAC TTTTATTTTA TTTCGGTTTT TCAAGACAGG ATTTCGATGT GTCGCCCTGG
  CTGTCCTGGA ACTTACTCTG TAGACCAGGT GGGCCTCGAA CTCGAACTCA GAAATCCGCC
  TGCCTCTGCC TCCCAAGTGC TGGGATTAAA GGGTGTGCCA CTGCCTGGCA GGAGCTCAGA
  R
  TTACTGTAAC ATCTTTGTAC CTTATTTTGG ATCTGTGTTT CGCCATATTC TCAGGTCAGT
  TGTTGGTGGG GGTGGTGGAA GAAAAGCAAA GAACCATCTA CGGAAGAGGT GTTTGATGTC
  TATAGTTCCA GGTGCTCATC TCTTTAATCA ACCACATCAT ACAAGTCAGA AAGAAAGAAA
  CCACAGTGAA CAAAGGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210093	MGP_WTSI_10_128183214	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258838656					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210093	MGP_WTSI_10_128183214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128582027 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1935 bp distal
Cpgi2419	CpG island 2419	1544 bp proximal
Dgka	diacylglycerol kinase, alpha	1303 bp upstream
Gm31504	predicted gene, 31504	276 bp downstream
Gm66065	predicted gene, 66065	within coordinates
Pym1	PYM homolog 1, exon junction complex associated factor	Intron
Rr385481	regulatory region 385481	1167 bp upstream
Rr402364	regulatory region 402364	1209 bp downstream
Rr441313	regulatory region 441313	1352 bp distal
Rr441314	regulatory region 441314	236 bp distal
Rr441315	regulatory region 441315	within coordinates
Rr441316	regulatory region 441316	181 bp proximal
Rr441317	regulatory region 441317	1241 bp proximal
Rr441318	regulatory region 441318	1807 bp proximal
Tssr96440	transcription start site region 96440	1336 bp downstream
Tssr96441	transcription start site region 96441	1135 bp downstream
Tssr96442	transcription start site region 96442	924 bp downstream
Tssr96443	transcription start site region 96443	299 bp upstream
Tssr96444	transcription start site region 96444	1630 bp upstream
Tssr96445	transcription start site region 96445	1692 bp upstream
Tssr99947	transcription start site region 99947	1906 bp upstream
Tssr99948	transcription start site region 99948	1876 bp upstream
Tssr99949	transcription start site region 99949	1271 bp upstream
Tssr99950	transcription start site region 99950	1100 bp upstream
Tssr99951	transcription start site region 99951	1077 bp upstream
Tssr99952	transcription start site region 99952	1073 bp upstream
Tssr99953	transcription start site region 99953	1036 bp upstream
Tssr99954	transcription start site region 99954	692 bp upstream
Tssr99955	transcription start site region 99955	659 bp upstream
Tssr99956	transcription start site region 99956	75 bp downstream
Tssr99957	transcription start site region 99957	142 bp downstream
Tssr99958	transcription start site region 99958	1470 bp downstream
Tssr99959	transcription start site region 99959	1562 bp downstream