rs258838941 SNP Detail

Summary

• ID
  rs258838941
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119181448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCAGTC TCTCCAGCTT
  GACTGGCCCA GCCGCCCAGC ACACAGCTCA GCAGTGCCCA GCACACAGCT CAGCAGCGCC
  CCCACCTGGT GCATTTGCTG CCCACACACG TGCTCTGTGC GGCTTATAGT CAGGGCAGAA
  GCCAAGCCTT CCCTGCCCTC AGGAATTTGG GGACCAGAGG AGACAAGAGT AAAAATAAAT
  W
  AATAAATTAA TTAATTAATT AAAAAAAAAA AAAACCCTGC CCTTCTCACT TGGCATGACC
  TGGACTGAGG TTGTGTGTAT GAGCTTAGGA GAGATGGTTT GTATCATGAG GGTGTCCCTG
  CTAGGGACAT CCACAGGCAG CTTTTCCTTC TACAGTGCCT CTGGCTGCTG TGGGGAGTTG
  GGCTGTGGAA CATGAGTTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	CZECHII/EiJ	KK/HlJ	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
ss379135637	MGP_WTSI_9_119261500	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	CZECHII/EiJ	KK/HlJ	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
rs258838941					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379135637	MGP_WTSI_9_119261500	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T