rs258844212 SNP Detail

Summary

• ID
  rs258844212
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:41395480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCCAGG ACAAGAAGGA
  CGGCTTGCGA CGCACGGACT GCTGCCCTAG AGGTCTCCGC GGCCGCTTCT CTCCCTCCGG
  CCGGCTTCCT AGTGGTCTCG CCCGTTCCGC CCCGCCCCGC CGGGCTGCTC ACGTGACCGG
  CGCGCGCTCC CGCGGGGCGG GCTTCTCGGG GGGCGGCGCC GCAGGGACGC AGTGCTAGAC
  S
  GAGCCTGCTT TGCCGCAGCT TTTCTCCCGG ACGCCTGGGC TGAAGACACA ATGTCGGGCT
  CCTCCCGCCG ACTGCTCTGG GCCGCCACCT GCCTCGCCGT GCTCTGCGTC TCGGCCGCGC
  AGCCCAACAT CACCACCCTG GCTCCCAACG TGACCGAGGT GCCGACCACG ACCACCAAAG
  TGGTCCCGAC GACGCAAATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380146492	MGP_WTSI_10_41239290	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258844212					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380146492	MGP_WTSI_10_41239290	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:41395480 () rs orientation: forward

Symbol	Name	Function Class
Cd164	CD164 antigen	mRNA-UTR
Cpgi1473	CpG island 1473	within coordinates
Gm67065	predicted gene, 67065	71 bp upstream
Rr401848	regulatory region 401848	788 bp downstream
Rr401849	regulatory region 401849	245 bp downstream
Rr430366	regulatory region 430366	82 bp distal
Rr430367	regulatory region 430367	881 bp distal
Rr430368	regulatory region 430368	322 bp distal
Rr430369	regulatory region 430369	60 bp distal
Tssr93048	transcription start site region 93048	37 bp downstream
Tssr93049	transcription start site region 93049	4 bp downstream
Tssr93050	transcription start site region 93050	9 bp upstream
Tssr93051	transcription start site region 93051	246 bp upstream
Tssr93052	transcription start site region 93052	333 bp upstream
Tssr93053	transcription start site region 93053	366 bp upstream
Tssr93054	transcription start site region 93054	390 bp upstream
Tssr93055	transcription start site region 93055	464 bp upstream
Tssr93056	transcription start site region 93056	496 bp upstream
Tssr93057	transcription start site region 93057	506 bp upstream
Tssr93058	transcription start site region 93058	1045 bp upstream
Tssr97407	transcription start site region 97407	381 bp upstream
Tssr97408	transcription start site region 97408	364 bp upstream