rs258849955 SNP Detail

Summary

• ID
  rs258849955
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28452429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGAGT GTGATGCCAC
  CTCTCAGAAG TGTGTCTGTG CGATAGTGTG TGTGTGTGTG TGTGTGTGTG TGAGTGTGAT
  GCCACCTCTC AGAAGTGTGT CTGTGCGGTA GTGGTTGACT TGAGTGCCCA GGGCTGGGCC
  AGATGCAATG ATCCTGGCCA GTGGCAGGAC AGTGTGCTGG TGCTGGTGGT GGAGCAGTAG
  K
  GGGACAGTTA GGTCCTTCTA ACCACCCCCC ACAAAAAAAA AAAAAAACCT CTTCCAAGAA
  AGAAAACAAC TTCCTTCCCA TGGCAAGAGC CCCGGACCGA ACTGTAACAT CCAGGCTCCA
  GGAGGGTGAC ACTGAGGATT CTCCAGGATG GTCTCCAGGG TCCAAGAAAA CAAGACAAGG
  GCCAGAGAAC TAAGGCTGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss353479002	MGP_WTSI_2_28417937	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs258849955					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353479002	MGP_WTSI_2_28417937	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28452429 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Gm13381	predicted gene 13381	within coordinates
Rr553836	regulatory region 553836	1630 bp distal
Tssr16963	transcription start site region 16963	1818 bp downstream
Tssr16964	transcription start site region 16964	1454 bp downstream
Tssr16965	transcription start site region 16965	92 bp upstream
Tssr23268	transcription start site region 23268	1842 bp upstream
Tssr23269	transcription start site region 23269	1810 bp upstream
Tssr23270	transcription start site region 23270	1738 bp upstream
Tssr23271	transcription start site region 23271	1225 bp upstream
Tssr23272	transcription start site region 23272	1190 bp upstream
Tssr23273	transcription start site region 23273	1174 bp upstream
Tssr23274	transcription start site region 23274	1140 bp upstream
Tssr23275	transcription start site region 23275	1077 bp upstream
Tssr23276	transcription start site region 23276	within coordinates
Tssr23277	transcription start site region 23277	16 bp downstream
Tssr23278	transcription start site region 23278	956 bp downstream