rs258851806 SNP Detail

Summary

• ID
  rs258851806
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3286695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGACGTCC TGGCTGGGGG
  TGTGCCCAAG AGTGATTGAG TCATTGTGGG CAGGGCCTTG ACGCGTGTCT GACCCCACCC
  ATTCACCCCT TCCCCCCACC CCAGGGCCTG GCCTTCATGG TCGTCCATCC TGCCTTCCCC
  GAGATGCTGA GCAAGGCCAC CTGGCCCTGC CTCCAGTACT TTGCCGCGAG GGGGGGGGGG
  S
  ACAAAGGTCA GTGGGAAGGG GCCTCAGGGT AGCTACTTTC ATCTTTTTAG GAAGATGGGC
  GTGGTCTGTT GGTGGCCATA CCCACTGTAA GTGGCATCAT GATTGCAGTT CTGAGTTTGG
  GAGAAGAGGG TGGGTTCTGG GGATGATGGA GCGGGGAAAT GAGGTCACCA CACCAACCAC
  AAGTGATGTC ACTTCCTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323871536	CHEV_12_3236695	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258851806					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3286695 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4353	CpG island 4353	655 bp distal
Gm60416	predicted gene, 60416	within coordinates
Rab10os	RAB10, member RAS oncogene family, opposite strand	within coordinates
Rr256055	regulatory region 256055	1306 bp proximal
Rr265316	regulatory region 265316	within coordinates
Rr267101	regulatory region 267101	1479 bp proximal
Tssr112476	transcription start site region 112476	1173 bp downstream
Tssr112477	transcription start site region 112477	894 bp downstream
Tssr112478	transcription start site region 112478	856 bp downstream
Tssr115578	transcription start site region 115578	1398 bp upstream