rs258853817 SNP Detail

Summary

• ID
  rs258853817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141546925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACAAGGT TGCTGAATTT
  GGCCAGGTTA GTTTGCATTG TGTCCTCAGT TGATTGGTTG GTGGTCTGGC TACTTACTGG
  TGATTGGTTC GGGGTGAGCA TCTGACTCAA CCCTAAAGCC AATGAGCTCC TTGCTCTGGG
  AGTCTGGCGT GGGCAGTGGC TGCCATTTTC TTTTGTTGGA GAAGGATGAG GCAGAAAAGA
  Y
  TCGGAAGGAG AGTTTCTGGT TTCTTCCAGG CTCCACACGG CCTTGATCTA GAATGTTCCT
  GACATCTAGC TATGTGTCTG CCCTTGGCTT AGAATTCCTC TTTTTGCGGG GCTAGTTCCA
  CAGGTTTCTC TTACTTTCCT ATGAGAAAGA GCTGTCGAGA GCTGGAAAAA TACTCCGGGG
  TCAGGGTAGT TTTCCTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363530380	MGP_WTSI_4_141375529	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258853817					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363530380	MGP_WTSI_4_141375529	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141546925 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	537 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	237 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1715 bp downstream
Tssr40106	transcription start site region 40106	1684 bp downstream
Tssr40107	transcription start site region 40107	1632 bp downstream
Tssr40108	transcription start site region 40108	570 bp downstream
Tssr40109	transcription start site region 40109	535 bp downstream
Tssr40110	transcription start site region 40110	512 bp downstream
Tssr40111	transcription start site region 40111	1711 bp upstream
Tssr40112	transcription start site region 40112	1739 bp upstream
Tssr40113	transcription start site region 40113	1768 bp upstream
Tssr44369	transcription start site region 44369	1717 bp upstream
Tssr44370	transcription start site region 44370	1677 bp upstream
Tssr44371	transcription start site region 44371	1646 bp upstream
Tssr44372	transcription start site region 44372	1615 bp upstream
Tssr44373	transcription start site region 44373	1328 bp upstream
Tssr44374	transcription start site region 44374	482 bp upstream
Tssr44375	transcription start site region 44375	249 bp upstream
Tssr44376	transcription start site region 44376	231 bp upstream
Tssr44377	transcription start site region 44377	370 bp downstream
Tssr44378	transcription start site region 44378	489 bp downstream
Tssr44379	transcription start site region 44379	1738 bp downstream
Tssr44380	transcription start site region 44380	1750 bp downstream