rs258871822 SNP Detail

Summary

• ID
  rs258871822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121487672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTACTG GCAGGGGAGA
  TGTCTCAATG CATAAAGAGC TTGCTACACA AGTGCAGAGA CCTCAGAACC CTTGTCAAGC
  TCAGCATGGT AGCACACATC TGGAATCCTA GTGCTCCTGA GGGGGAGATG TGAGGCTGAG
  GCAGGAGAAT TCCCAGAAGC CCCTGCAGGC CAGATCCTGG GTGCACATAC AGGCAAACAA
  Y
  AACAACAACA ACAACAACAA CGCAAGAGAA CCAGTTTCAA GTTAGGTGTC AGCTGAAAAC
  TGTCCTTTGG CCTCCACACA GCACATGTGT GCACGTGTAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACAAATAC ACACATACAT ACACACACAC GTGGAGAGAG
  ATAGAAAGAA AGAGAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	PL/J	PWK/PhJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
ss355470619	MGP_WTSI_2_121482927	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	PL/J	PWK/PhJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
rs258871822					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355470619	MGP_WTSI_2_121482927	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121487672 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563864	regulatory region 563864			1760 bp distal
Rr563865	regulatory region 563865			963 bp distal
Rr563866	regulatory region 563866			993 bp proximal