rs258879146 SNP Detail

Summary

• ID
  rs258879146
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79834029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGTCTCC CCGCTCCAGG
  CCACTTTCCA AACAAGCCAT TACCATCGGC GGGCACGGTG CCCTGGCTGC AGGGCCTTGT
  CTGCAACGTA AACAACTCCT GCTTCCAGCA CCCAACGCCT GGCGAGAAGC CTGGGGTCCT
  GAGTAACTTT AAGGATTCCT TGTGAGTGAA CTTGGCAGGT GGGGGCTGGC TGGTGAATGG
  R
  GTCCTGGACT CTTGAGGCCC CGCCTCCCAC TCCCTCTCTG CTCCCCAGGA TCTCGAGGCT
  CCTCGCTGAT ACCCGCACAG TGCTCGGGGG CCACAGCATC CAGGACATGC TGGATGCCCT
  GGGGAAACTG ATCCCCGTGC TCAGGGCAGT TGGAGGTGGA GGTAGAGACC TGGGGCTGTA
  AATCGGGCAG GGGGTTGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381012856	MGP_WTSI_10_79460940	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258879146					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381012856	MGP_WTSI_10_79460940	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79834029 () rs orientation: forward

Symbol	Name	Function Class
Abca7	ATP-binding cassette, sub-family A member 7	within coordinates
Cpgi1834	CpG island 1834	1432 bp distal
Cpgi1835	CpG island 1835	304 bp distal
Rr225140	regulatory region 225140	within coordinates
Rr402033	regulatory region 402033	1607 bp downstream
Tssr94450	transcription start site region 94450	1720 bp downstream
Tssr94451	transcription start site region 94451	1690 bp downstream
Tssr94452	transcription start site region 94452	1671 bp downstream
Tssr94453	transcription start site region 94453	1644 bp downstream
Tssr94454	transcription start site region 94454	694 bp downstream