rs258884964 SNP Detail

Summary

• ID
  rs258884964
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25146238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGCCACA GGGGGCTGAG
  CTGACTGCGC GGCACCAGGC TCGGTTCAGA ATGAAGCGCG AGCCGGGCGG GGCGTCTTTT
  ATGTGCACTC GCCCTGGCCG CTCAATCGGG CATCCCTGAA TTGCCATTGG TGGAAGGGCT
  CCCGTCCATC ATACCAGGCG AATTCTCCCA TTGGTGAGTA TGAGCTCTCG GTTCTTCCGC
  R
  TTCGCAGCCA ATGCCTGTAG GGTGGGAGGA GCGGGCGAGA GCCCAGCTGG GGTGGCAAAT
  TGAGTACAGT GTGCGCTGGG CGCCCAGGGG GCCTGAGTGT GCAATTGTGC CCGCCTTATT
  CCAATTCCCA GAGCTGGCAG GACCCCTGCC CCGGGGGTGT GCCCGGAGCT AGCTATACCC
  GCCCCCAGGA CTTCCAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323938299	CHEV_12_25781104	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258884964					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25146238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	within coordinates
Gm59395	predicted gene, 59395	221 bp upstream
Id2	inhibitor of DNA binding 2	147 bp upstream
Rr403250	regulatory region 403250	within coordinates
Tssr112979	transcription start site region 112979	500 bp downstream
Tssr112980	transcription start site region 112980	198 bp upstream
Tssr112981	transcription start site region 112981	213 bp upstream
Tssr112982	transcription start site region 112982	1189 bp upstream
Tssr115883	transcription start site region 115883	1709 bp upstream
Tssr115884	transcription start site region 115884	446 bp upstream
Tssr115885	transcription start site region 115885	143 bp upstream
Tssr115886	transcription start site region 115886	1000 bp downstream