rs258885361 SNP Detail

Summary

• ID
  rs258885361
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62172970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGATGAA TTTTGATGTT
  AGAGTTTGGA CTTAAGCCTC TGCCTCATCT GCTCTTCAAA TTGGCTTTGG CTTCTCATTC
  ATCATTCTCC AGAGGCAGGT GTTGAAGCAC TAGGCAGAAT AGCTCCTGAG TTTATAGGAC
  TTTCCATGCT TGGACATAGC CAAGAAAACC ATCTTTCAGG TTGGATAATA CTAAGAAGAA
  R
  AAAAAAATCA AGCATCAAAA TGAGAAAAAT GGTGGAAAAA TACAACTTAA AGCATAGTAT
  TTTCCTTAAA ACATTTATAT ATATACACAT GCATATATAT ATATATTTAT ATATATATTT
  AAGTCAAGAT AAGTTGCAAG ATAAGATGCT GGAAGATACC CAGTGAGTGA AATGTTGAAG
  TCAGGTAATG TTGAGTAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354198757	MGP_WTSI_2_62180683	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258885361					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354198757	MGP_WTSI_2_62180683	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62172970 () rs orientation: forward

Symbol	Name	Function Class
Dpp4	dipeptidylpeptidase 4	Intron
Rr557853	regulatory region 557853	331 bp distal
Tssr507	transcription start site region 507	896 bp downstream
Tssr24253	transcription start site region 24253	1007 bp downstream
Tssr24254	transcription start site region 24254	1031 bp downstream
Tssr24255	transcription start site region 24255	1044 bp downstream
Tssr24256	transcription start site region 24256	1102 bp downstream
Tssr24257	transcription start site region 24257	1191 bp downstream
Tssr24258	transcription start site region 24258	1341 bp downstream