rs258887374 SNP Detail

Summary

• ID
  rs258887374
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10361383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGTTTAC CCCCTTTAAA
  ATGATGCCGG GTGGAAAAGG AATGCCGGTA ATTCCACTGA AAATCTTAGA TATCCCCAAA
  GCGCTTTTGT TGTTTTCTTT TTCACGGTAT AGTAAGAAAA AAAAATCAAT TACTGAGTGC
  CTTTGACAGA GGCATTATAG GGTTCCATGA CACCCGGATG GAAAGTACCA CAAGCAGGTC
  M
  AATCTTCTGC CAATAAGGCT GCTTATTGTT TCTATTATTT TGCAGTCCAT GTTTAAAACC
  AACCAACCAA CCAACCAATA ATGCTAAGTA TATATCTGCT CAGATTCTTC GGTTTACAGA
  CCACCTTTGT GCTTCGTCAG GAGGATGAGT TTGCGAGGGA TCAAAACCAA GGTCTGTGTG
  TGCAAGATAT AGACGAGATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395382005	MGP_WTSI_16_10543612	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258887374					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395382005	MGP_WTSI_16_10543612	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10361383 () rs orientation: forward

Symbol	Name	Function Class
Clec16a	C-type lectin domain family 16, member A	1820 bp upstream
Cpgi7953	CpG island 7953	223 bp distal
Cpgi7954	CpG island 7954	1382 bp proximal
Dexi	dexamethasone-induced transcript	465 bp upstream
Rr404676	regulatory region 404676	217 bp downstream
Rr404677	regulatory region 404677	1612 bp upstream
Rr511517	regulatory region 511517	721 bp distal
Rr511518	regulatory region 511518	within coordinates
Rr511519	regulatory region 511519	1330 bp proximal
Tssr137042	transcription start site region 137042	1821 bp upstream
Tssr137043	transcription start site region 137043	1839 bp upstream
Tssr137044	transcription start site region 137044	1871 bp upstream
Tssr137045	transcription start site region 137045	1909 bp upstream
Tssr139926	transcription start site region 139926	423 bp upstream