rs258888932 SNP Detail

Summary

• ID
  rs258888932
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66827675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT GAGAAAGAAA GAAAGAAAGA
  R
  AGAGAGAGAG AGAGAGAGAG GGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	ST/bJ	SWR/J
ss642250960	FVB_NJ_9_66768200	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	ST/bJ	SWR/J
rs258888932					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss642250960	FVB_NJ_9_66768200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66827675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21974	CpG island 21974	450 bp distal
Rab8b	RAB8B, member RAS oncogene family	706 bp upstream
Rr368814	regulatory region 368814	807 bp downstream
Rr401489	regulatory region 401489	419 bp downstream
Rr681814	regulatory region 681814	216 bp distal
Rr681815	regulatory region 681815	1876 bp proximal
Tssr85773	transcription start site region 85773	1531 bp downstream
Tssr85774	transcription start site region 85774	1511 bp downstream
Tssr90295	transcription start site region 90295	1196 bp upstream
Tssr90296	transcription start site region 90296	683 bp upstream