rs258890412 SNP Detail

Summary

• ID
  rs258890412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:91015056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAATTAGCA TGCTAGGTGG AGGTAAAACT
  CTTGAAAGAA AGTGGGTATC AGAAAATGGG CTGAAGAGCA GAAGAGAAGG ACACGGAGAC
  TCACGTGGGG GTGGTTGATG GAGACGTAGG CGTGCAGGGC CTCCACATAT GTGTGTTGCA
  R
  CCTCTCTACT TGGAGCTGGT CCTGCACGTT GGGCCGGTCT ATAGGTCACC AACAGGGTTG
  AGTCAAAATC TTGGTCCCAT AACCCAAATC ACAACTCCCA AATAGGGACA TGTCCCACCC
  AACCTCTCTC ATCCACTGTA GGGACTATAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391936	CHEV_2_91024868	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258890412					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91015056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	1287 bp distal
Madd	MAP-kinase activating death domain	1652 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	Coding-Synonymous
Rr367225	regulatory region 367225	522 bp downstream
Rr397125	regulatory region 397125	1311 bp downstream
Rr560661	regulatory region 560661	1874 bp distal
Rr560663	regulatory region 560663	1174 bp distal
Rr560664	regulatory region 560664	1793 bp distal
Rr560665	regulatory region 560665	403 bp distal
Tssr25161	transcription start site region 25161	1778 bp upstream
Tssr25162	transcription start site region 25162	1759 bp upstream
Tssr25163	transcription start site region 25163	1651 bp upstream
Tssr25164	transcription start site region 25164	871 bp upstream
Tssr25165	transcription start site region 25165	812 bp upstream
Tssr25166	transcription start site region 25166	750 bp upstream
Tssr25167	transcription start site region 25167	688 bp upstream